Welcome to gTrack’s documentation!

Contents:

• How to Graph CNV Data
• Customizing a Small Data Set
  • gr.tile(gr , w) - Divide GRanges into tiles of length “w”
  • gTrack(gr + n) - Extend each range by “n” base pairs
  • stack.gap - Specify degree of spacing(in x-direction) between ADJACENT tiles.
  • y.field - Specify y-axis of graph
  • bars - Plot data points as vertical bars
  • lines - Plot data points as lines.
  • circles - Plot data points as circles.
  • colormap - Specify mapping of colors to values.
  • gr.colorfield - Automatically specify mapping of colors to values.
  • gr.labelfield - Plot values for each data point.
• How to Create Graphs
  • Edges Parameter
  • col Column
  • lwd Column
  • lty Column
  • h Column
• How to Create Heat Maps
  • mdata Parameter
  • Zooming In and Out of a Graph
• How To Graph Relationships In The Genome
  • Using Draw.paths Parameter
• Graphing Point Mutations
  • name Parameter
• How to Graph Structural Variations
  • Graping BAM data
• How to Graph Super Enhancers
  • Using dt2gr (gUtils) and y.field (gTrack) and gr.colorfield and colormaps
  • Using parse.gr (gUtils)
  • Reading bigWig in gTrack

Indices and tables

• Index
• Module Index
• Search Page